PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G016200.2

Common Name

B456_003G016200, LOC105787552

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 546aa MW: 56272.2 Da PI: 8.7986

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G016200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gorai.003G016200.2 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.1	0.0013	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Gorai.003G016200.2 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP
3	zf-C2H2	11.5	0.00096	167	185	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Gorai.003G016200.2 167 DCGTVFSRRDSFITHRAFC 185 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.56E-7	60	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	61	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	102	132	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.1E-4	125	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.56E-7	132	157	No hit	No description
SMART	SM00355	150	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MPVEVDNSST VSGDASVSST GNQNPPPKSA VKKKRNLPGM PDPDAEVIAL SPTTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPTCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT VFSRRDSFIT 180 HRAFCDALAV ESAKTQTNPS SESDPKVQAA DSSPRRSPPA APPPVSAPSA ITSSDIRIQS 240 SDPRTVVEEA PTPAPAPAPP PAGLNGSSSS SVSLVSSGCS SSSSSSSVFS SLFTSTTVSA 300 SIHPPQPLAP APPLVGLNGS CSGSVSLVSS GASSSSSSGV FASLFASSTV SASIQPPQPP 360 ALTNLIQADL APSTSIEPIS LCLSTSHGSS IFGTTGQERR QHAPPLQPAM SATALLQKAA 420 QMGAAASNAS LLRGLGIVSS SAPQENLQWG QAQVDPDNAS IAAGLGLGLP CDGSSGLKEL 480 MMGTPVFGPK QTTLDFLGLG VAAGGNPNAS LSALITSIGG GFDATTAAAS FRGGDYTSKD 540 IGRSS*

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MPVEVDNSST VSGDASVSST GNQNPPPKSA VKKKRNLPGM PDPDAEVIAL SPTTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT VFSRRDSFIT  180
HRAFCDALAV ESAKTQTNPS SESDPKVQAA DSSPRRSPPA APPPVSAPSA ITSSDIRIQS  240
SDPRTVVEEA PTPAPAPAPP PAGLNGSSSS SVSLVSSGCS SSSSSSSVFS SLFTSTTVSA  300
SIHPPQPLAP APPLVGLNGS CSGSVSLVSS GASSSSSSGV FASLFASSTV SASIQPPQPP  360
ALTNLIQADL APSTSIEPIS LCLSTSHGSS IFGTTGQERR QHAPPLQPAM SATALLQKAA  420
QMGAAASNAS LLRGLGIVSS SAPQENLQWG QAQVDPDNAS IAAGLGLGLP CDGSSGLKEL  480
MMGTPVFGPK QTTLDFLGLG VAAGGNPNAS LSALITSIGG GFDATTAAAS FRGGDYTSKD  540
IGRSS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.3014	1e-163	flower\|seedling\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48792669	1e-163

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469452.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X2
Swissprot	Q9LVQ7	0.0	IDD1_ARATH; Protein indeterminate-domain 1
TrEMBL	A0A0D2NUZ0	0.0	A0A0D2NUZ0_G
STRING	VIT_04s0023g01430.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Gorai.003G016200.2
Entrez Gene	105787552

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]